Difference between revisions of "Bioinformatics Software"

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Installed version: 2.29.0
 
Installed version: 2.29.0
  
Usage: module load bedtools
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Usage:  
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module load bedtools
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=== GATK ===
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Genome Analysis Toolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery.
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The tools can be used individually or chained together into complete workflows.
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[https://software.broadinstitute.org/gatk/documentation/ Webpage]
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Installed version: 4.1.3.0
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Usage:
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module load gatk

Revision as of 11:11, 23 September 2019

Software installed in Bioinformatics cluster

Bedtools

Bedtools is a fast, flexible toolset for genome arithmetic.

Webpage

Installed version: 2.29.0

Usage:

module load bedtools

GATK

Genome Analysis Toolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery.

The tools can be used individually or chained together into complete workflows.

Webpage

Installed version: 4.1.3.0

Usage:

module load gatk