Difference between revisions of "Bioinformatics Software"
From CsWiki
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module load gatk | module load gatk | ||
| + | |||
| + | = SourceTracker2 = | ||
| + | SourceTracker is a Bayesian approach to estimate the proportion of contaminants in a given community that come from possible source environments. | ||
| + | |||
| + | [https://github.com/biota/sourcetracker2 Webpage] | ||
| + | |||
| + | Usage: | ||
| + | |||
| + | module load conda-st2 | ||
Revision as of 16:03, 23 September 2019
Software installed in Bioinformatics cluster
Bedtools
Bedtools is a fast, flexible toolset for genome arithmetic.
Installed version: 2.29.0
Usage:
module load bedtools
GATK
Genome Analysis Toolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery.
The tools can be used individually or chained together into complete workflows.
Installed version: 4.1.3.0
Usage:
module load gatk
SourceTracker2
SourceTracker is a Bayesian approach to estimate the proportion of contaminants in a given community that come from possible source environments.
Usage:
module load conda-st2
