Software installed in Bioinformatics cluster
Peak calling tool for CLIP-seq data
To use run this command
module load peakachu
An ultrafast de novo tool for removal of duplicates in paired short DNA sequence reads in FASTQ format
A simple Perl program that allows the user to compare QC filtered fastq files
Ultrafast universal RNA-seq aligner
Installed version: 2.7.3a
Bedtools is a fast, flexible toolset for genome arithmetic.
Installed version: 2.29.0
module load bedtools
Genome Analysis Toolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery.
The tools can be used individually or chained together into complete workflows.
Installed version: 126.96.36.199
module load gatk
SourceTracker is a Bayesian approach to estimate the proportion of contaminants in a given community that come from possible source environments.
module load conda-st2